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Status
Public on Mar 15, 2006
Title
bgcn replicate 1
Sample type
RNA
Source name
bgcn- testes
Organism
Drosophila melanogaster Characteristics
bgcn- genotype, adult males, dissected whole testes
Extracted molecule
total RNA
Extraction protocol
750 bgcn- adult male testes were dissected and collected in RNAlater. Total RNA was extracted using TRIzol (Invitrogen) and purified with an RNAeasy column (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
dissected bgcn- adult testes
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Feb 06, 2006
Last update date
Feb 06, 2006
Contact name
Natalie Terry
E-mail(s)
nterry@mail.med.upenn.edu Phone
215-898-4553
Organization name
University of Pennsylvania
Department
Department of Cell and Developmental Biology
Lab
BRB, room 1120
Street address
421 Curie Blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL72 Series (1)
GSE4188 Drosophila whole testis gene expression
Data table header descriptions ID_REF VALUE MAS5-calculated Signal Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 142121_at
19.8
A
0.877253
142122_at
16.7
A
0.921094
142123_at
152.6
A
0.078906
142124_at
29.7
A
0.364945
142125_at
105.4
P
0.001755
142126_at
63.3
A
0.318883
142127_at
8.6
A
0.945289
142128_at
36.9
A
0.388782
142129_at
11.2
A
0.724538
142130_at
167.3
A
0.181343
142131_at
23
A
0.586954
142132_at
43.2
A
0.681117
142133_at
335.2
P
0.027766
142134_at
12.1
A
0.877253
142135_at
7.4
A
0.945289
142136_at
96.4
A
0.745101
142137_at
3.9
A
0.984836
142138_at
7.9
A
0.929927
142139_at
25.8
A
0.889607
142140_at
131.1
A
0.235169
13966 356 Kbytes .Supplementary file Size Download File type/resource GSM95931 .CEL.gz
1.7 Mb
(ftp) (http) CEL
Processed data included within Sample table
