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Status
Public on Mar 15, 2006
Title
Os+bgcn replicate 3
Sample type
RNA
Source name
Os+bgcn- testes
Organism
Drosophila melanogaster Characteristics
Os+bgcn- genotype, adult males, dissected whole testes
Extracted molecule
total RNA
Extraction protocol
150 Os+bgcn- adult male testes were dissected and collected in RNAlater. Total RNA was extracted using TRIzol (Invitrogen) and purified with an RNAeasy column (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
dissected Os+bgcn- adult testes
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Feb 06, 2006
Last update date
Feb 06, 2006
Contact name
Natalie Terry
E-mail(s)
nterry@mail.med.upenn.edu Phone
215-898-4553
Organization name
University of Pennsylvania
Department
Department of Cell and Developmental Biology
Lab
BRB, room 1120
Street address
421 Curie Blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL72 Series (1)
GSE4188 Drosophila whole testis gene expression
Data table header descriptions ID_REF VALUE MAS5-calculated Signal Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE 142121_at
133.5
A
0.181284
142122_at
18.1
A
0.635055
142123_at
349.2
P
0.000491
142124_at
19.6
A
0.275462
142125_at
39
P
0.001432
142126_at
174.2
P
0.023995
142127_at
68.1
A
0.437646
142128_at
96.9
P
0.009283
142129_at
3.5
A
0.834792
142130_at
221.5
P
0.007827
142131_at
4
A
0.611218
142132_at
34.4
A
0.724538
142133_at
433.4
P
0.000944
142134_at
52.8
A
0.235169
142135_at
10.7
A
0.818657
142136_at
26.2
A
0.764831
142137_at
5.3
A
0.877253
142138_at
16
A
0.745101
142139_at
11.9
A
0.957858
142140_at
254.8
P
0.027766
13966 355 Kbytes .Supplementary file Size Download File type/resource GSM95938.CEL.gz
1.7 Mb
(ftp) (http) CEL
Processed data included within Sample table
