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Sample GSM95945 Query DataSets for GSM95945
Status Public on Mar 15, 2006
Title wild-type (wt) replicate 4
Sample type RNA
 
Source name wild-type testes
Organism Drosophila melanogaster
Characteristics wild-type genotype, adult males, dissected whole testes
Extracted molecule total RNA
Extraction protocol 150 bgcn- adult male testes were dissected and collected in RNAlater. Total RNA was extracted using TRIzol (Invitrogen) and purified with an RNAeasy column (Qiagen).
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description dissected wild-type adult testes
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Feb 06, 2006
Last update date Feb 06, 2006
Contact name Natalie Terry
E-mail(s) nterry@mail.med.upenn.edu
Phone 215-898-4553
Organization name University of Pennsylvania
Department Department of Cell and Developmental Biology
Lab BRB, room 1120
Street address 421 Curie Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL72
Series (1)
GSE4188 Drosophila whole testis gene expression

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
142121_at 28.1 A 0.877253
142122_at 19.8 A 0.745101
142123_at 35.5 A 0.48748
142124_at 195.7 P 0.000491
142125_at 14.7 A 0.388756
142126_at 205.8 P 0.023995
142127_at 58.1 A 0.586954
142128_at 24.4 A 0.635055
142129_at 31.6 A 0.487477
142130_at 15.5 A 0.849855
142131_at 7 A 0.764831
142132_at 7.3 A 0.911443
142133_at 256.5 A 0.110449
142134_at 48.1 A 0.48748
142135_at 12.6 A 0.864026
142136_at 28.3 A 0.681117
142137_at 40.1 A 0.586954
142138_at 11.7 A 0.972234
142139_at 28.5 A 0.979337
142140_at 21.6 A 0.537511

Total number of rows: 13966

Table truncated, full table size 355 Kbytes.




Supplementary file Size Download File type/resource
GSM95945.CEL.gz 1.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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