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Sample GSM96630 Query DataSets for GSM96630
Status Public on Aug 08, 2006
Title wt 38hrs DD
Sample type RNA
 
Source name adult mouse whole adrenal 38hrs after lights off
Organism Mus musculus
Characteristics Strain: C57B/6J
Gender: male
Age: 3 months
Tissue: whole adrenal
Treatment protocol 2 weeks entrainment to LD 12:12
killed in DD at 38hrs after "lights off"
Extracted molecule total RNA
Extraction protocol RNeasy Micro Kit (QIAGEN)
Label biotin
Label protocol http://www.rzpd.de/protocols
 
Hybridization protocol http://www.rzpd.de/protocols
Scan protocol http://www.rzpd.de/protocols
Description sample is part of a series (of 12 time points) to identify circadian clock regulated genes in the murine adrenal
Data processing expression data were normalized and modelled (PM/MM model) using Dchip 1.3
 
Submission date Feb 14, 2006
Last update date May 21, 2007
Contact name Henrik Oster
E-mail(s) henrik.oster@uni-luebeck.de
Organization name University of Lübeck
Department CBBM
Street address Marie Curie Street
City Lübeck
ZIP/Postal code 23562
Country Germany
 
Platform ID GPL1261
Series (2)
GSE4238 rhythmic transcriptome in the murine wt adrenal
GSE4253 Wildtype and Per2Cry1 double mutant mice: temporal gene expression profiling of adrenal gland

Data table header descriptions
ID_REF
VALUE normalized expression value
Call expression call; P - present, M - marginally expressed, A - absent

Data table
ID_REF VALUE Call
AFFX-BioB-5_at 205.635 P
AFFX-BioB-M_at 247.714 P
AFFX-BioB-3_at 279.117 P
AFFX-BioC-5_at 333.211 P
AFFX-BioC-3_at 372.511 P
AFFX-BioDn-5_at 1412.08 P
AFFX-BioDn-3_at 2706.94 P
AFFX-CreX-5_at 5517.54 P
AFFX-CreX-3_at 5791.98 P
AFFX-DapX-5_at 87.6075 A
AFFX-DapX-M_at 67.1476 A
AFFX-DapX-3_at 26.204 A
AFFX-LysX-5_at 93.287 A
AFFX-LysX-M_at 189.983 A
AFFX-LysX-3_at 46.8018 P
AFFX-PheX-5_at 105.52 A
AFFX-PheX-M_at 345.8 A
AFFX-PheX-3_at 208.734 A
AFFX-ThrX-5_at 126.214 A
AFFX-ThrX-M_at 405.496 A

Total number of rows: 45101

Table truncated, full table size 937 Kbytes.




Supplementary data files not provided

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