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Sample GSM96939 Query DataSets for GSM96939
Status Public on Dec 31, 2006
Title control day 2 (#7) vs. 400 mg/kg day 2 BECM (#50)
Sample type RNA
 
Channel 1
Source name control day 2 (#7)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from control day 2 (#7)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy3
 
Channel 2
Source name 400 mg/kg day 2 BECM (#50)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from 400 mg/kg day 2 BECM (#50)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy5
 
 
Description control day 2 (#7) vs. 400 mg/kg day 2 BECM (#50)
Data processing Loess normalized, and combined dye flip replicates with Rosetta Resolver error weighted model
 
Submission date Feb 16, 2006
Last update date Feb 17, 2006
Contact name Joel Parker
E-mail(s) jparker@constellagroup.com
Organization name Constella Group
Street address 2605 Meridian Parkway
City Durham
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL890
Series (1)
GSE4254 Bis(2-chloroethoxy)methane-induced heart toxicity and recovery in male fisher rats

Data table header descriptions
ID_REF probeset IDs from the Agilent Rat Oligo (4130A) array
VALUE log2 of PRE_VALUE
PRE_VALUE ratios: Loess normalized, and combined dye flip replicates with Rosetta Resolver

Data table
ID_REF VALUE PRE_VALUE
3 -0.2037 0.86833
4 -0.2475 0.84237
5 -0.2303 0.85248
6 -0.2691 0.82982
8 -0.1137 0.92422
9 -0.3080 0.80777
10 -0.2333 0.85067
11 -0.2828 0.82197
12 -0.3562 0.78124
13 -0.0434 0.97034
15 -0.2224 0.85715
16 0.0655 1.04647
17 -0.1542 0.89866
18 -0.3309 0.79502
19 -0.0321 0.97802
20 -0.0371 0.97458
22 -0.3660 0.77595
23 -0.2872 0.8195
24 -0.2155 0.86124
25 -0.3807 0.76809

Total number of rows: 20500

Table truncated, full table size 418 Kbytes.




Supplementary data files not provided

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