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Sample GSM96940 Query DataSets for GSM96940
Status Public on Dec 31, 2006
Title control day 2 (#7) vs. 400 mg/kg day 2 BECM (#52)
Sample type RNA
 
Channel 1
Source name control day 2 (#7)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from control day 2 (#7)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy3
 
Channel 2
Source name 400 mg/kg day 2 BECM (#52)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from 400 mg/kg day 2 BECM (#52)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy5
 
 
Description control day 2 (#7) vs. 400 mg/kg day 2 BECM (#52)
Data processing Loess normalized, and combined dye flip replicates with Rosetta Resolver error weighted model
 
Submission date Feb 16, 2006
Last update date Feb 17, 2006
Contact name Joel Parker
E-mail(s) jparker@constellagroup.com
Organization name Constella Group
Street address 2605 Meridian Parkway
City Durham
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL890
Series (1)
GSE4254 Bis(2-chloroethoxy)methane-induced heart toxicity and recovery in male fisher rats

Data table header descriptions
ID_REF probeset IDs from the Agilent Rat Oligo (4130A) array
VALUE log2 of PRE_VALUE
PRE_VALUE ratios: Loess normalized, and combined dye flip replicates with Rosetta Resolver

Data table
ID_REF VALUE PRE_VALUE
3 0.0453 1.0319
4 0.0335 1.02351
5 0.0742 1.05276
6 0.0167 1.01161
8 -0.0642 0.95649
9 0.2940 1.22603
10 0.0482 1.03395
11 0.1840 1.13603
12 -0.4001 0.75782
13 -0.1477 0.90267
15 -0.0421 0.97121
16 -0.0629 0.95734
17 -0.1207 0.91976
18 0.1827 1.13499
19 0.0591 1.0418
20 0.5360 1.44996
22 0.3738 1.29577
23 0.0351 1.02466
24 0.3587 1.28228
25 0.4886 1.40313

Total number of rows: 20500

Table truncated, full table size 417 Kbytes.




Supplementary data files not provided

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