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Sample GSM96942 Query DataSets for GSM96942
Status Public on Dec 31, 2006
Title control day 5 (#19) vs. 400 mg/kg day 5 BECM (#54)
Sample type RNA
 
Channel 1
Source name control day 5 (#19)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from control day 5 (#19)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy3
 
Channel 2
Source name 400 mg/kg day 5 BECM (#54)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from 400 mg/kg day 5 BECM (#54)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy5
 
 
Description control day 5 (#19) vs. 400 mg/kg day 5 BECM (#54)
Data processing Loess normalized, and combined dye flip replicates with Rosetta Resolver error weighted model
 
Submission date Feb 16, 2006
Last update date Feb 17, 2006
Contact name Joel Parker
E-mail(s) jparker@constellagroup.com
Organization name Constella Group
Street address 2605 Meridian Parkway
City Durham
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL890
Series (1)
GSE4254 Bis(2-chloroethoxy)methane-induced heart toxicity and recovery in male fisher rats

Data table header descriptions
ID_REF probeset IDs from the Agilent Rat Oligo (4130A) array
VALUE log2 of PRE_VALUE
PRE_VALUE ratios: Loess normalized, and combined dye flip replicates with Rosetta Resolver

Data table
ID_REF VALUE PRE_VALUE
3 -0.1652 0.89181
4 -0.1940 0.87415
5 -0.2950 0.81508
6 -0.2241 0.85614
8 -0.3451 0.78726
9 0.0313 1.0219
10 -0.1728 0.88709
11 0.2807 1.2148
12 -0.3460 0.78678
13 -0.0138 0.99049
15 0.1575 1.11536
16 -0.1026 0.93135
17 -0.1710 0.88821
18 0.0496 1.035
19 -0.0287 0.9803
20 0.5605 1.47483
22 -0.2305 0.85235
23 0.2471 1.18683
24 0.2897 1.22236
25 -0.1838 0.88041

Total number of rows: 20500

Table truncated, full table size 418 Kbytes.




Supplementary data files not provided

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