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Sample GSM96946 Query DataSets for GSM96946
Status Public on Dec 31, 2006
Title control day 5 (#9) vs. 400 mg/kg day 5 BECM (#57)
Sample type RNA
 
Channel 1
Source name control day 5 (#9)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from control day 5 (#9)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy3
 
Channel 2
Source name 400 mg/kg day 5 BECM (#57)
Organism Rattus norvegicus
Characteristics Total cardiac RNA from 400 mg/kg day 5 BECM (#57)
Extracted molecule total RNA
Extraction protocol QIAGEN Rneasy kit (QIAGEN, Valencia, CA)
Label Cy5
 
 
Description control day 5 (#9) vs. 400 mg/kg day 5 BECM (#57)
Data processing Loess normalized, and combined dye flip replicates with Rosetta Resolver error weighted model
 
Submission date Feb 16, 2006
Last update date Feb 17, 2006
Contact name Joel Parker
E-mail(s) jparker@constellagroup.com
Organization name Constella Group
Street address 2605 Meridian Parkway
City Durham
State/province NC
ZIP/Postal code 27713
Country USA
 
Platform ID GPL890
Series (1)
GSE4254 Bis(2-chloroethoxy)methane-induced heart toxicity and recovery in male fisher rats

Data table header descriptions
ID_REF probeset IDs from the Agilent Rat Oligo (4130A) array
VALUE log2 of PRE_VALUE
PRE_VALUE ratios: Loess normalized, and combined dye flip replicates with Rosetta Resolver

Data table
ID_REF VALUE PRE_VALUE
3 0.0233 1.01626
4 0.0609 1.04312
5 0.0523 1.03689
6 0.0504 1.03557
8 -0.2122 0.8632
9 -0.5161 0.69928
10 -0.1824 0.88124
11 0.7688 1.70391
12 0.0324 1.02272
13 0.1037 1.07456
15 -0.2944 0.81543
16 0.2101 1.1568
17 0.0714 1.05073
18 0.1197 1.08649
19 0.0047 1.00323
20 0.4549 1.37067
22 0.2056 1.15317
23 0.1340 1.0973
24 0.8130 1.75683
25 -0.2176 0.85997

Total number of rows: 20500

Table truncated, full table size 417 Kbytes.




Supplementary data files not provided

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