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Sample GSM972565 Query DataSets for GSM972565
Status Public on May 21, 2014
Title muscle wt rep1
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics tissue: muscle
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 30193968
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2079.131 0
ILMN_2721178 490.7384 0
ILMN_3033922 499.2176 0
ILMN_3092673 2133.274 0
ILMN_2816356 12.11722 0.01879699
ILMN_2808939 15.64819 0.00877193
ILMN_2634564 259.1286 0
ILMN_2737647 2.932054 0.2092732
ILMN_2734484 375.233 0
ILMN_2952292 18.47396 0.002506266
ILMN_2699078 -4.405748 0.8634085
ILMN_1213681 356.8692 0
ILMN_2735413 7.344122 0.05639098
ILMN_2735415 5.163902 0.1065163
ILMN_2891688 386.1539 0
ILMN_2637698 357.5801 0
ILMN_2674228 81.91885 0
ILMN_2601546 4.040548 0.1553885
ILMN_1230831 9.189481 0.03508772
ILMN_2848071 13.12384 0.01503759

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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