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Sample GSM972566 Query DataSets for GSM972566
Status Public on May 21, 2014
Title muscle wt rep2
Sample type RNA
 
Source name muscle
Organism Mus musculus
Characteristics tissue: muscle
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 30193969
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3458.951 0
ILMN_2721178 779.5005 0
ILMN_3033922 417.179 0
ILMN_3092673 1701.98 0
ILMN_2816356 8.446507 0.02255639
ILMN_2808939 28.90772 0.001253133
ILMN_2634564 237.9222 0
ILMN_2737647 13.30154 0.001253133
ILMN_2734484 201.9709 0
ILMN_2952292 19.41677 0.001253133
ILMN_2699078 -0.3273617 0.4937343
ILMN_1213681 433.048 0
ILMN_2735413 0.4099563 0.4160401
ILMN_2735415 3.897851 0.1340852
ILMN_2891688 300.8928 0
ILMN_2637698 347.1019 0
ILMN_2674228 77.66575 0
ILMN_2601546 4.926732 0.08646616
ILMN_1230831 8.955137 0.02005013
ILMN_2848071 8.2645 0.02631579

Total number of rows: 25697

Table truncated, full table size 758 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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