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Sample GSM972567 Query DataSets for GSM972567
Status Public on May 21, 2014
Title muscle wt rep3
Sample type RNA
Source name muscle
Organism Mus musculus
Characteristics tissue: muscle
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 30193970
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2678.44 0
ILMN_2721178 584.8526 0
ILMN_3033922 518.7994 0
ILMN_3092673 2156.23 0
ILMN_2816356 11.05583 0.02631579
ILMN_2808939 21.44016 0.002506266
ILMN_2634564 334.7982 0
ILMN_2737647 9.134927 0.04135338
ILMN_2734484 330.7198 0
ILMN_2952292 22.53508 0.002506266
ILMN_2699078 -3.102389 0.7944862
ILMN_1213681 374.1383 0
ILMN_2735413 -0.5496594 0.5250627
ILMN_2735415 12.16788 0.01879699
ILMN_2891688 368.0179 0
ILMN_2637698 349.5223 0
ILMN_2674228 69.81239 0
ILMN_2601546 5.204878 0.1177945
ILMN_1230831 13.4102 0.01253133
ILMN_2848071 4.288093 0.1616541

Total number of rows: 25697

Table truncated, full table size 750 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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