GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM972574 Query DataSets for GSM972574
Status Public on May 21, 2014
Title brain wt rep2
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 510
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1250.409 0
ILMN_2721178 304.1013 0
ILMN_3033922 370.4951 0
ILMN_3092673 1575.288 0
ILMN_2816356 0.9517412 0.3421053
ILMN_2808939 346.06 0
ILMN_2634564 80.82805 0
ILMN_2737647 11.91646 0.01253133
ILMN_2734484 63.44259 0
ILMN_2952292 16.3877 0.005012531
ILMN_2699078 -3.545661 0.7994987
ILMN_1213681 155.1543 0
ILMN_2735413 0.1962671 0.4172932
ILMN_2735415 5.317899 0.09774436
ILMN_2891688 112.8986 0
ILMN_2637698 539.6331 0
ILMN_2674228 98.21532 0
ILMN_2601546 6.070986 0.0764411
ILMN_1230831 1.443151 0.302005
ILMN_2848071 6.598397 0.07142857

Total number of rows: 25697

Table truncated, full table size 737 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap