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Sample GSM972575 Query DataSets for GSM972575
Status Public on May 21, 2014
Title brain wt rep3
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 542
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1226.952 0
ILMN_2721178 262.3238 0
ILMN_3033922 317.1066 0
ILMN_3092673 1422.232 0
ILMN_2816356 14.44792 0.003759399
ILMN_2808939 365.2403 0
ILMN_2634564 82.22523 0
ILMN_2737647 4.374692 0.1378446
ILMN_2734484 76.45435 0
ILMN_2952292 17.44392 0.001253133
ILMN_2699078 -4.782336 0.8709273
ILMN_1213681 159.3538 0
ILMN_2735413 5.20374 0.1190476
ILMN_2735415 4.665068 0.1340852
ILMN_2891688 108.8045 0
ILMN_2637698 495.3325 0
ILMN_2674228 84.00617 0
ILMN_2601546 -0.3272766 0.5012531
ILMN_1230831 0.8716675 0.3696742
ILMN_2848071 10.98488 0.02130326

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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