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Sample GSM972577 Query DataSets for GSM972577
Status Public on May 21, 2014
Title brain wt rep5
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 559
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 5
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1100.492 0
ILMN_2721178 245.1642 0
ILMN_3033922 348.0204 0
ILMN_3092673 1774.451 0
ILMN_2816356 2.266924 0.2481203
ILMN_2808939 336.6721 0
ILMN_2634564 96.48537 0
ILMN_2737647 0.1743866 0.4348371
ILMN_2734484 83.52726 0
ILMN_2952292 13.58253 0.01378446
ILMN_2699078 -2.203087 0.6741855
ILMN_1213681 137.9721 0
ILMN_2735413 6.524182 0.06140351
ILMN_2735415 -5.606079 0.9197995
ILMN_2891688 132.2174 0
ILMN_2637698 441.304 0
ILMN_2674228 59.70845 0
ILMN_2601546 2.150631 0.2531328
ILMN_1230831 3.955588 0.141604
ILMN_2848071 11.24397 0.02005013

Total number of rows: 25697

Table truncated, full table size 742 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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