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Sample GSM972578 Query DataSets for GSM972578
Status Public on May 21, 2014
Title brain wt rep6
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote wt
age: 17 weeks
mouse id: 560
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 6
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1192.603 0
ILMN_2721178 250.4931 0
ILMN_3033922 358.3068 0
ILMN_3092673 1487.441 0
ILMN_2816356 -2.206709 0.7155389
ILMN_2808939 264.1203 0
ILMN_2634564 84.60003 0
ILMN_2737647 4.577857 0.1403509
ILMN_2734484 66.47593 0
ILMN_2952292 19.52686 0.005012531
ILMN_2699078 -5.422633 0.9172933
ILMN_1213681 129.6367 0
ILMN_2735413 0.08885539 0.4987469
ILMN_2735415 4.519502 0.1466165
ILMN_2891688 89.55714 0
ILMN_2637698 482.1547 0
ILMN_2674228 91.30715 0
ILMN_2601546 1.866279 0.3295739
ILMN_1230831 5.184602 0.1165414
ILMN_2848071 0.6293516 0.4373434

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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