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Sample GSM972580 Query DataSets for GSM972580
Status Public on May 21, 2014
Title brain Tardbp rep2
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote transgenic human mutant TDP-43
age: 17 weeks
mouse id: 505
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1309.849 0
ILMN_2721178 283.2286 0
ILMN_3033922 289.2396 0
ILMN_3092673 1390.987 0
ILMN_2816356 7.501612 0.06766918
ILMN_2808939 413.5523 0
ILMN_2634564 114.812 0
ILMN_2737647 9.949059 0.04385965
ILMN_2734484 43.55038 0
ILMN_2952292 15.17254 0.00877193
ILMN_2699078 0.4418459 0.4298246
ILMN_1213681 166.1636 0
ILMN_2735413 5.560697 0.1203008
ILMN_2735415 -0.5370461 0.5275689
ILMN_2891688 143.1902 0
ILMN_2637698 434.5984 0
ILMN_2674228 114.6218 0
ILMN_2601546 2.167328 0.2994987
ILMN_1230831 2.387727 0.2882206
ILMN_2848071 3.741911 0.197995

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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