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Sample GSM972581 Query DataSets for GSM972581
Status Public on May 21, 2014
Title brain Tardbp rep3
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote transgenic human mutant TDP-43
age: 17 weeks
mouse id: 511
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1231.132 0
ILMN_2721178 283.9711 0
ILMN_3033922 315.3932 0
ILMN_3092673 1395.773 0
ILMN_2816356 8.231133 0.04010025
ILMN_2808939 348.8575 0
ILMN_2634564 107.1487 0
ILMN_2737647 4.66412 0.112782
ILMN_2734484 65.7951 0
ILMN_2952292 9.914644 0.02882206
ILMN_2699078 4.905585 0.1102757
ILMN_1213681 130.5579 0
ILMN_2735413 -1.618965 0.6115288
ILMN_2735415 2.112067 0.2556391
ILMN_2891688 98.99266 0
ILMN_2637698 480.3026 0
ILMN_2674228 90.12965 0
ILMN_2601546 3.897011 0.1403509
ILMN_1230831 7.214522 0.05137845
ILMN_2848071 10.92247 0.02130326

Total number of rows: 25697

Table truncated, full table size 735 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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