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Sample GSM972582 Query DataSets for GSM972582
Status Public on May 21, 2014
Title brain Tardbp rep4
Sample type RNA
 
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote transgenic human mutant TDP-43
age: 17 weeks
mouse id: 543
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1303.051 0
ILMN_2721178 292.4358 0
ILMN_3033922 267.6574 0
ILMN_3092673 1474.22 0
ILMN_2816356 12.01575 0.02005013
ILMN_2808939 376.9042 0
ILMN_2634564 68.62391 0
ILMN_2737647 4.352083 0.1290727
ILMN_2734484 64.08178 0
ILMN_2952292 24.32217 0.001253133
ILMN_2699078 -0.9225855 0.5701754
ILMN_1213681 133.0778 0
ILMN_2735413 -3.790955 0.8258145
ILMN_2735415 5.246768 0.0952381
ILMN_2891688 113.5272 0
ILMN_2637698 607.5518 0
ILMN_2674228 89.10227 0
ILMN_2601546 4.980784 0.1052632
ILMN_1230831 4.131484 0.1353384
ILMN_2848071 3.524294 0.1616541

Total number of rows: 25697

Table truncated, full table size 743 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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