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Sample GSM972583 Query DataSets for GSM972583
Status Public on May 21, 2014
Title brain Tardbp rep5
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote transgenic human mutant TDP-43
age: 17 weeks
mouse id: 449
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 5
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1247.27 0
ILMN_2721178 291.6664 0
ILMN_3033922 355.117 0
ILMN_3092673 1757.114 0
ILMN_2816356 4.52736 0.1253133
ILMN_2808939 349.3344 0
ILMN_2634564 86.10717 0
ILMN_2737647 8.385741 0.05137845
ILMN_2734484 46.95719 0
ILMN_2952292 15.1235 0.01378446
ILMN_2699078 -0.4068079 0.4962406
ILMN_1213681 163.2246 0
ILMN_2735413 -3.417785 0.802005
ILMN_2735415 2.643241 0.2192982
ILMN_2891688 70.19437 0
ILMN_2637698 480.3026 0
ILMN_2674228 116.4495 0
ILMN_2601546 5.599545 0.1027569
ILMN_1230831 -1.8443 0.6478696
ILMN_2848071 7.558824 0.06265664

Total number of rows: 25697

Table truncated, full table size 747 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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