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Sample GSM972584 Query DataSets for GSM972584
Status Public on May 21, 2014
Title brain Tardbp rep6
Sample type RNA
Source name brain
Organism Mus musculus
Characteristics tissue: brain
genetic background: C57BL/6J
genotype: heterozygote transgenic human mutant TDP-43
age: 17 weeks
mouse id: 579
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 6
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Jul 23, 2012
Last update date May 21, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39585 Decrease of Parkin and CD36 expression and body weight correlate with an increase of non-esterified fatty acids in a mouse model for TDP-43 pathology

Data table header descriptions
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1376.848 0
ILMN_2721178 326.2184 0
ILMN_3033922 353.3334 0
ILMN_3092673 1845.189 0
ILMN_2816356 11.85394 0.02506266
ILMN_2808939 326.7028 0
ILMN_2634564 97.08033 0
ILMN_2737647 -1.748725 0.6390978
ILMN_2734484 56.36741 0
ILMN_2952292 18.26789 0.005012531
ILMN_2699078 -1.814337 0.6478696
ILMN_1213681 171.1835 0
ILMN_2735413 -0.9617466 0.5676692
ILMN_2735415 -1.444213 0.6102757
ILMN_2891688 135.1794 0
ILMN_2637698 524.2534 0
ILMN_2674228 97.60777 0
ILMN_2601546 1.107412 0.3634085
ILMN_1230831 -4.040639 0.8458647
ILMN_2848071 11.5636 0.02506266

Total number of rows: 25697

Table truncated, full table size 753 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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