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Sample GSM978307 Query DataSets for GSM978307
Status Public on Jul 17, 2013
Title wild-type muscle_AB6
Sample type RNA
 
Source name wild-type muscle
Organism Danio rerio
Characteristics strain: AB
transgene: wild type
tissue type: muscle
Growth protocol Transgenic F0 animals grown until tumor visible, tumor or muscle dissected from adult
Extracted molecule total RNA
Extraction protocol Trizol RNA prep
Label biotin
Label protocol Affymetrix zebrafish array protocol
 
Hybridization protocol Affymetrix zebrafish array protocol
Scan protocol Affymetrix zebrafish array protocol
Data processing Affymetrix Gene Console, followed by GenePattern analysis
 
Submission date Jul 30, 2012
Last update date Jul 17, 2013
Contact name Richard Mark White
E-mail(s) whiter@mskcc.org
Phone 646-888-3415
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics
Lab White Lab
Street address 1275 York Avenue MB 424
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL1319
Series (1)
GSE39731 Expression arrays of KRASG12D rhabdomyosarcoma models in zebrafish

Data table header descriptions
ID_REF
VALUE GC-RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 159.9812361
AFFX-BioB-5_at 162.3147772
AFFX-BioB-M_at 198.7049018
AFFX-BioC-3_at 418.91993
AFFX-BioC-5_at 428.5961537
AFFX-BioDn-3_at 2513.242979
AFFX-BioDn-5_at 822.1256455
AFFX-CreX-3_at 7286.024048
AFFX-CreX-5_at 4149.029497
AFFX-DapX-3_at 868.228595
AFFX-DapX-5_at 122.9261698
AFFX-DapX-M_at 364.8898456
AFFX-Dr-AB076373-1_at 10.70764605
AFFX-Dr-acta1-3_at 24499.48321
AFFX-Dr-acta1-5_at 173.7261364
AFFX-Dr-acta1-5_x_at 5984.369954
AFFX-Dr-acta1-M_at 12759.58342
AFFX-Dr-AF292559-1_at 7.5049337
AFFX-Dr-AF292559-2_s_at 4.751567577
AFFX-Dr-AF292559-3_s_at 6.383588343

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM978307_ABR7.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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