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Sample GSM978309 Query DataSets for GSM978309
Status Public on Jul 17, 2013
Title wild-type muscle_AB8
Sample type RNA
 
Source name wild-type muscle
Organism Danio rerio
Characteristics strain: AB
transgene: wild type
tissue type: muscle
Growth protocol Transgenic F0 animals grown until tumor visible, tumor or muscle dissected from adult
Extracted molecule total RNA
Extraction protocol Trizol RNA prep
Label biotin
Label protocol Affymetrix zebrafish array protocol
 
Hybridization protocol Affymetrix zebrafish array protocol
Scan protocol Affymetrix zebrafish array protocol
Data processing Affymetrix Gene Console, followed by GenePattern analysis
 
Submission date Jul 30, 2012
Last update date Jul 17, 2013
Contact name Richard Mark White
E-mail(s) whiter@mskcc.org
Phone 646-888-3415
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics
Lab White Lab
Street address 1275 York Avenue MB 424
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL1319
Series (1)
GSE39731 Expression arrays of KRASG12D rhabdomyosarcoma models in zebrafish

Data table header descriptions
ID_REF
VALUE GC-RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 136.4449081
AFFX-BioB-5_at 143.9266658
AFFX-BioB-M_at 178.8297492
AFFX-BioC-3_at 399.4522122
AFFX-BioC-5_at 432.2174364
AFFX-BioDn-3_at 2480.228521
AFFX-BioDn-5_at 805.6287764
AFFX-CreX-3_at 6927.784276
AFFX-CreX-5_at 4073.806139
AFFX-DapX-3_at 786.8613138
AFFX-DapX-5_at 121.0094379
AFFX-DapX-M_at 390.5463551
AFFX-Dr-AB076373-1_at 11.42307481
AFFX-Dr-acta1-3_at 25354.21147
AFFX-Dr-acta1-5_at 1723.850618
AFFX-Dr-acta1-5_x_at 7945.977755
AFFX-Dr-acta1-M_at 13517.21146
AFFX-Dr-AF292559-1_at 8.156709959
AFFX-Dr-AF292559-2_s_at 4.916719747
AFFX-Dr-AF292559-3_s_at 6.364308038

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM978309_ABR9.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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