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Sample GSM978325 Query DataSets for GSM978325
Status Public on Jul 17, 2013
Title mylz RMS_MYLZ2-8
Sample type RNA
 
Source name rhabdomyosarcoma
Organism Danio rerio
Characteristics strain: AB
transgene: mylz2:KRASG12D
tissue type: rhabdomyosarcoma
Growth protocol Transgenic F0 animals grown until tumor visible, tumor or muscle dissected from adult
Extracted molecule total RNA
Extraction protocol Trizol RNA prep
Label biotin
Label protocol Affymetrix zebrafish array protocol
 
Hybridization protocol Affymetrix zebrafish array protocol
Scan protocol Affymetrix zebrafish array protocol
Data processing Affymetrix Gene Console, followed by GenePattern analysis
 
Submission date Jul 30, 2012
Last update date Jul 17, 2013
Contact name Richard Mark White
E-mail(s) whiter@mskcc.org
Phone 646-888-3415
Organization name Memorial Sloan Kettering Cancer Center
Department Cancer Biology & Genetics
Lab White Lab
Street address 1275 York Avenue MB 424
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platform ID GPL1319
Series (1)
GSE39731 Expression arrays of KRASG12D rhabdomyosarcoma models in zebrafish

Data table header descriptions
ID_REF
VALUE GC-RMA signal

Data table
ID_REF VALUE
AFFX-BioB-3_at 126.510086
AFFX-BioB-5_at 120.8171248
AFFX-BioB-M_at 164.5452865
AFFX-BioC-3_at 322.0678086
AFFX-BioC-5_at 347.6455439
AFFX-BioDn-3_at 2050.077382
AFFX-BioDn-5_at 642.063274
AFFX-CreX-3_at 7158.516296
AFFX-CreX-5_at 4040.04198
AFFX-DapX-3_at 690.2397654
AFFX-DapX-5_at 90.19368171
AFFX-DapX-M_at 285.8763075
AFFX-Dr-AB076373-1_at 9.091008922
AFFX-Dr-acta1-3_at 24422.79762
AFFX-Dr-acta1-5_at 687.9542592
AFFX-Dr-acta1-5_x_at 5841.175472
AFFX-Dr-acta1-M_at 12532.63194
AFFX-Dr-AF292559-1_at 7.097190111
AFFX-Dr-AF292559-2_s_at 4.724360497
AFFX-Dr-AF292559-3_s_at 5.745674244

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM978325_MYLZR-8.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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