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Sample GSM978955 Query DataSets for GSM978955
Status Public on Aug 08, 2012
Title B cell of WT mouse 1
Sample type RNA
 
Source name B CELLS
Organism Mus musculus
Characteristics genetic background: Balb/C
age: 6-8 wk
gender: male
cell type: B cell from lymph nodes
genotype: wild type
Extracted molecule total RNA
Extraction protocol B cells were isolated from lymph nodes with untouched magnetic separated assay, and dead cells were depleted with Dead Cell Removal Kit (Miltenyi Biotec). Cells were lysated with TRIzol reagent (Invitrogen). Transfer upper phase containing the RNA (final ethanol concentration of 35%) to a RNeasy spin cartridge and follow the manufacture’s guide (Qiangen).
Label biotin
Label protocol reference to the manual of Affymetrix (GeneAtlas™ 3’ IVT Express Kit)
 
Hybridization protocol reference to the manual of Affymetrix (GeneAtlas™ 3’ IVT Express Kit)
Scan protocol reference to the manual of Affymetrix (GeneAtlas™ 3’ IVT Express Kit), follow the manuscipts of GeneAtlas Workstation.
Data processing Command Console CHP file version 1, affymetrix-algorithm-name = rma, affymetrix-algorithm-version = 1.0, affymetrix-array-type = HT_MG-430_PM
 
Submission date Jul 31, 2012
Last update date Aug 08, 2012
Contact name qiuye guo
E-mail(s) tonyguo77@gmail.com
Organization name The military medical university
Street address GAO TAN YAN
City CHONGQING
ZIP/Postal code 510515
Country China
 
Platform ID GPL11180
Series (1)
GSE39779 Profiling study of B cells from lymph nodes in miR-146a over-expression transgenic mice

Data table header descriptions
ID_REF
VALUE log2 RMA signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 6.67272
AFFX-BioB-M_at 7.57504
AFFX-BioB-3_at 7.17005
AFFX-BioC-5_at 8.06875
AFFX-BioC-3_at 8.45953
AFFX-BioDn-5_at 9.37774
AFFX-BioDn-3_at 10.4436
AFFX-CreX-5_at 11.7164
AFFX-CreX-3_at 11.627
AFFX-DapX-5_at 6.57552
AFFX-DapX-M_at 8.7308
AFFX-DapX-3_at 9.99869
AFFX-LysX-5_at 7.02185
AFFX-LysX-M_at 7.39522
AFFX-LysX-3_at 8.63891
AFFX-PheX-5_at 6.37226
AFFX-PheX-M_at 7.43153
AFFX-PheX-3_at 7.10758
AFFX-ThrX-5_at 4.02956
AFFX-ThrX-M_at 6.18769

Total number of rows: 45141

Table truncated, full table size 983 Kbytes.




Supplementary file Size Download File type/resource
GSM978955.cel.gz 2.1 Mb (ftp)(http) CEL
GSM978955_NB_WT1.ga.B_cell_miR_146.rma.chp.gz 307.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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