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Sample GSM980790 Query DataSets for GSM980790
Status Public on Oct 30, 2013
Title apoE-Blood-32-weeks-2
Sample type RNA
Source name blood
Organism Mus musculus
Characteristics strain: B6.129P2-Apoe<tm1Unc>/J
gender: male
age: 32 weeks
tissue: blood
Treatment protocol Mouse blood was drawn by heart puncture into EDTA buffer, erythrocytes were lyzed, total blood cells were centrifuged, and taken up in Trizol.
Growth protocol Maintained under normal mouse chow / SPF conditions (12h light-dark cycle)
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy Lipid Tissue Mini Kit, Standardprotocol
Label Biotin/SAPE with Anti Streptavidin signal amplification
Label protocol ENZO T7 High Yield Transcript Labelling Kit, 24h IVT
Hybridization protocol 60rpm, 18h, 45 centigrade in Affymetrix Hybridization Buffer
Scan protocol Affymetrix Scanner 3000, single scan
Description Staining with Fluidic Station 400 Protocol: EukGe-WS2v4
Data processing GCOS 1.4, scaled to 500
Submission date Aug 06, 2012
Last update date Oct 31, 2013
Contact name Andreas Johann Richard Habenicht
Organization name Ludwig Maximilians Universität München
Department Medicine
Lab Institute for Cardiovascular Disease Prevention
Street address Pettenkoferstraße 9a
City Munich
State/province Bavaria
ZIP/Postal code 80336
Country Germany
Platform ID GPL1261
Series (1)
GSE40156 Transcript atlases reveal that artery tertiary lymphoid organs but not secondary lymphoid organs control key steps of atherosclerosis T cell immunity in aged apoe-/- mice.

Data table header descriptions
VALUE Signal value scaled to 500 by GCOS
ABS_CALL Call by default alpha
DETECTION P-VALUE Detection p-value as calculated by GCOS

Data table
AFFX-BioB-5_at 367.5 P 0.001796
AFFX-BioB-M_at 705.6 P 0.00007
AFFX-BioB-3_at 370 P 0.000446
AFFX-BioC-5_at 1075.1 P 0.000127
AFFX-BioC-3_at 1070.1 P 0.000044
AFFX-BioDn-5_at 1345.1 P 0.000044
AFFX-BioDn-3_at 5247.6 P 0.00007
AFFX-CreX-5_at 14790.3 P 0.000052
AFFX-CreX-3_at 15017.9 P 0.000044
AFFX-DapX-5_at 505.1 P 0.000195
AFFX-DapX-M_at 833.6 P 0.002023
AFFX-DapX-3_at 983.6 P 0.00007
AFFX-LysX-5_at 59 P 0.004484
AFFX-LysX-M_at 113.3 A 0.275146
AFFX-LysX-3_at 208.7 P 0.000127
AFFX-PheX-5_at 51.2 A 0.185131
AFFX-PheX-M_at 70.5 A 0.102165
AFFX-PheX-3_at 116.8 A 0.078002
AFFX-ThrX-5_at 110.5 P 0.023929
AFFX-ThrX-M_at 166.3 P 0.004017

Total number of rows: 45101

Table truncated, full table size 1221 Kbytes.

Supplementary file Size Download File type/resource
GSM980790_apoE_Blood_32_weeks_2.CEL.gz 4.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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