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Sample GSM982170 Query DataSets for GSM982170
Status Public on May 02, 2014
Title lung_wt_rep4
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: wild type
treatment protocol: control
age: 22 weeks
mouse id: 30145690
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 4
replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2001.392 0
ILMN_2721178 404.907 0
ILMN_3033922 606.0676 0
ILMN_3092673 3819.058 0
ILMN_2816356 -3.684116 0.5651629
ILMN_2808939 400.4387 0
ILMN_2634564 190.3201 0
ILMN_2737647 19.86102 0.1378446
ILMN_2734484 390.9368 0
ILMN_2952292 89.35928 0
ILMN_2699078 -9.397343 0.697995
ILMN_1213681 308.4164 0
ILMN_2735413 -30.18806 0.9548872
ILMN_2735415 23.33516 0.0989975
ILMN_2891688 480.8329 0
ILMN_2637698 1388.709 0
ILMN_2674228 189.8163 0
ILMN_2601546 0.434692 0.4786967
ILMN_1230831 -35.84378 0.9874687
ILMN_2848071 -28.89007 0.9498747

Total number of rows: 25697

Table truncated, full table size 726 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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