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Sample GSM982171 Query DataSets for GSM982171
Status Public on May 02, 2014
Title lung_mut_rep1
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: homozygote
treatment protocol: control
age: 22 weeks
mouse id: 30145703
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 5
replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2628.516 0
ILMN_2721178 426.8451 0
ILMN_3033922 600.3043 0
ILMN_3092673 3756.904 0
ILMN_2816356 -7.138771 0.641604
ILMN_2808939 471.7179 0
ILMN_2634564 217.1805 0
ILMN_2737647 -1.671451 0.5213032
ILMN_2734484 395.7145 0
ILMN_2952292 50.08733 0.005012531
ILMN_2699078 10.58551 0.2706767
ILMN_1213681 252.9502 0
ILMN_2735413 -24.2301 0.9122807
ILMN_2735415 35.47086 0.01879699
ILMN_2891688 515.4953 0
ILMN_2637698 1513.066 0
ILMN_2674228 174.5882 0
ILMN_2601546 16.89817 0.1679198
ILMN_1230831 -10.38589 0.716792
ILMN_2848071 0.06564444 0.4761905

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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