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Sample GSM982172 Query DataSets for GSM982172
Status Public on May 02, 2014
Title lung_mut_rep2
Sample type RNA
 
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: homozygote
treatment protocol: control
age: 22 weeks
mouse id: 30145704
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 6
replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
ID_REF
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2613.411 0
ILMN_2721178 505.6618 0
ILMN_3033922 677.7777 0
ILMN_3092673 3983.301 0
ILMN_2816356 -11.94012 0.7443609
ILMN_2808939 433.9518 0
ILMN_2634564 214.9776 0
ILMN_2737647 -10.0361 0.7005013
ILMN_2734484 434.3128 0
ILMN_2952292 78.34507 0
ILMN_2699078 1.097333 0.4498747
ILMN_1213681 300.6781 0
ILMN_2735413 0.2329444 0.4786967
ILMN_2735415 32.91628 0.02255639
ILMN_2891688 500.865 0
ILMN_2637698 1515.551 0
ILMN_2674228 188.0045 0
ILMN_2601546 -7.155097 0.6453634
ILMN_1230831 -4.612377 0.5864662
ILMN_2848071 -22.64125 0.914787

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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