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Sample GSM982175 Query DataSets for GSM982175
Status Public on May 02, 2014
Title lung_wt_chall_rep2
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: wild type
treatment protocol: OVA challenge
age: 22 weeks
mouse id: 30145680
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 9
replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2070.02 0
ILMN_2721178 439.6469 0
ILMN_3033922 550.0228 0
ILMN_3092673 3598.146 0
ILMN_2816356 -22.97586 0.9122807
ILMN_2808939 514.7773 0
ILMN_2634564 157.4392 0
ILMN_2737647 3.949134 0.4498747
ILMN_2734484 436.8107 0
ILMN_2952292 147.1654 0
ILMN_2699078 -5.671497 0.6353384
ILMN_1213681 206.2495 0
ILMN_2735413 -19.09911 0.8746867
ILMN_2735415 16.48694 0.235589
ILMN_2891688 530.9893 0
ILMN_2637698 1230.968 0
ILMN_2674228 191.3329 0
ILMN_2601546 2.511 0.481203
ILMN_1230831 -35.37058 0.991228
ILMN_2848071 -24.98533 0.933584

Total number of rows: 25697

Table truncated, full table size 739 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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