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Sample GSM982178 Query DataSets for GSM982178
Status Public on May 02, 2014
Title lung_mut_chall_rep1
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: homozygote
treatment protocol: OVA challenge
age: 22 weeks
mouse id: 30145694
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 12
replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2598.112 0
ILMN_2721178 550.671 0
ILMN_3033922 538.0435 0
ILMN_3092673 3171.117 0
ILMN_2816356 -23.48359 0.9223058
ILMN_2808939 564.0401 0
ILMN_2634564 152.5468 0
ILMN_2737647 -12.16315 0.7543859
ILMN_2734484 447.3357 0
ILMN_2952292 120.9112 0
ILMN_2699078 1.107313 0.5037594
ILMN_1213681 185.4187 0
ILMN_2735413 -24.56102 0.9310777
ILMN_2735415 16.40242 0.2142857
ILMN_2891688 486.841 0
ILMN_2637698 1343.988 0
ILMN_2674228 268.9709 0
ILMN_2601546 24.98882 0.1102757
ILMN_1230831 -26.76384 0.9511278
ILMN_2848071 -18.4605 0.8558897

Total number of rows: 25697

Table truncated, full table size 741 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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