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Sample GSM982180 Query DataSets for GSM982180
Status Public on May 02, 2014
Title lung_mut_chall_rep3
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: homozygote
treatment protocol: OVA challenge
age: 22 weeks
mouse id: 30145698
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 14
replicate 3
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2422.409 0
ILMN_2721178 475.2415 0
ILMN_3033922 596.8096 0
ILMN_3092673 3800.962 0
ILMN_2816356 -27.48397 0.9473684
ILMN_2808939 631.1676 0
ILMN_2634564 70.33504 0.0112782
ILMN_2737647 -7.409947 0.697995
ILMN_2734484 439.12 0
ILMN_2952292 158.7797 0
ILMN_2699078 4.472045 0.4373434
ILMN_1213681 221.2758 0
ILMN_2735413 -19.89907 0.89599
ILMN_2735415 11.4353 0.3107769
ILMN_2891688 579.7552 0
ILMN_2637698 1350.436 0
ILMN_2674228 214.5986 0
ILMN_2601546 -0.02978005 0.5300752
ILMN_1230831 -25.40717 0.9310777
ILMN_2848071 -37.22079 0.9924812

Total number of rows: 25697

Table truncated, full table size 740 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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