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Sample GSM982181 Query DataSets for GSM982181
Status Public on May 02, 2014
Title lung_mut_chall_rep4
Sample type RNA
Source name lung
Organism Mus musculus
Characteristics strain: C57BL/6
genotype/treatment: homozygote
treatment protocol: OVA challenge
age: 22 weeks
mouse id: 30145702
tissue: lung
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description SAMPLE 15
replicate 4
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Aug 08, 2012
Last update date May 02, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE39953 IFIT2 mediates IFN signaling

Data table header descriptions
VALUE cubic spline normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2153.62 0
ILMN_2721178 461.1889 0
ILMN_3033922 751.7885 0
ILMN_3092673 4671.751 0
ILMN_2816356 -9.928314 0.7807018
ILMN_2808939 666.6403 0
ILMN_2634564 85.82777 0.02506266
ILMN_2737647 -10.63261 0.7882205
ILMN_2734484 373.891 0
ILMN_2952292 180.9537 0
ILMN_2699078 6.530516 0.4699248
ILMN_1213681 277.2852 0
ILMN_2735413 -18.5584 0.8847118
ILMN_2735415 2.937074 0.5325814
ILMN_2891688 478.8533 0
ILMN_2637698 1472.078 0
ILMN_2674228 265.7838 0
ILMN_2601546 -5.398685 0.6954888
ILMN_1230831 -38.02814 0.9949875
ILMN_2848071 -34.04044 0.9862155

Total number of rows: 25697

Table truncated, full table size 751 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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