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Sample GSM983677 Query DataSets for GSM983677
Status Public on Aug 09, 2014
Title SS100
Sample type RNA
 
Source name pharynx
Organism Homo sapiens
Characteristics cinsarc group: C1
fusion transcrit: SSX1
metastasis: no
time: 1.725
age group: pediatric
Treatment protocol Frozen tissue
Extracted molecule total RNA
Extraction protocol Total RNA were extracted from frozen tumor samples using the miRNeasy® Mini Kit (Qiagen) and purified using the RNeasy® Min Elute TM Cleanup Kit (Qiagen) according to the manufacturer’s procedures. RNA quality was checked on an Agilent 2100 bioanalyzer (Agilent Technologies, Santa Clara, CA, USA).
Label Cy3
Label protocol RNA was labeled according to manufacturer’s protocol.
 
Hybridization protocol Gene expression analysis was carried out using Agilent Whole human 44K Genome Oligo Array (G4845A; Agilent Technologies, Santa Clara, CA, USA), according to the manufacturer’s protocol.
Scan protocol the scan was performed according to manufacturer’s recommendations with scanning resolution of 5µm
Data processing For each series all microarrays were simultaneously normalized using the Quantile algorithm.
 
Submission date Aug 09, 2012
Last update date Aug 09, 2014
Contact name céline brulard
E-mail(s) celine.brulard@inserm.fr
Phone +33247366041
Organization name Institut Bergonié
Street address 229 cours de l'argonne
City Bordeaux
ZIP/Postal code 33076
Country France
 
Platform ID GPL13497
Series (2)
GSE40018 Expression data from 34 Synovial Sarcomas
GSE40025 Expression data from Synovial Sarcomas

Data table header descriptions
ID_REF
VALUE Values are Log2

Data table
ID_REF VALUE
GE_BrightCorner 16.299795
DarkCorner 0.9282547
A_23_P146146 0.95714915
A_23_P42935 8.131141
A_23_P117082 11.184547
A_23_P2683 6.2455807
A_24_P358131 5.022911
A_33_P3367647 0.9555168
A_23_P157316 2.7795403
A_32_P14850 11.389901
A_23_P158596 5.737586
A_23_P350107 8.493796
A_23_P388190 8.200768
A_23_P106544 9.096325
A_33_P3219745 0.95148164
A_32_P85539 7.293564
A_23_P94998 6.9177155
A_33_P3235677 5.130793
A_23_P417014 1.1345916
A_23_P103905 9.933768

Total number of rows: 34183

Table truncated, full table size 763 Kbytes.




Supplementary file Size Download File type/resource
GSM983677_SS100_Expression.txt.gz 2.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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