|
Status |
Public on Mar 20, 2006 |
Title |
single cell from ICM E3.5, biological rep8 |
Sample type |
RNA |
|
|
Source name |
Single cell from ICM in blastocyst at E3.5
|
Organism |
Mus musculus |
Characteristics |
Strain: C57BL/6
|
Extracted molecule |
total RNA |
Extraction protocol |
Single cell was lysed by adding to the tube containing cell lysis buffer, and the clude lysate was used for cDNA synthesis and amplification without purification.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared from the PCR-amplified double-starnded cDNA according to the standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2004, Affymetrix: Eukaryotic One-Cycle Target Labeling Assay)
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|
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Hybridization protocol |
Hybridization was performed according to the standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2004, Affymetrix: Eukaryotic Target Hybridization)
|
Scan protocol |
The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix)
|
Description |
Gene expression data from single ICM cells (E3.5)
|
Data processing |
CEL data were generated by GeneChip Operating Software and then subjected to the dCHIP software. Data obtained from the eight amplified samples (ES-10pg-amplified-rep1:8) were normalized together with the default settings. The Model-Based Expression Indices (MBEI) were calculated using the PM/MM difference mode with log-2 transformation of signal intensity and truncation of low values to zero.
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|
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Submission date |
Feb 27, 2006 |
Last update date |
Aug 28, 2018 |
Contact name |
Kazuki Kurimoto |
E-mail(s) |
kurimoto@naramed-u.ac.jp
|
Organization name |
Nara Medical University
|
Department |
School of medicine
|
Lab |
Department of Embryology
|
Street address |
840 Shijo-Cho, Kashihara
|
City |
Nara |
ZIP/Postal code |
634-8521 |
Country |
Japan |
|
|
Platform ID |
GPL1261 |
Series (2) |
GSE4307 |
Expression data from single cells from ICMs of mouse blastocysts at E3.5 |
GSE4309 |
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis |
|
Relations |
Reanalyzed by |
GSE119085 |