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Sample GSM991354 Query DataSets for GSM991354
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 002
Sample type RNA
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 62.5
strain sjl(%): 37.5
strain dba2(%): 0
log10(guhcl fractionation a-beta1-40): 5.04704653
transgenic(tg): APP Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 002
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3211 1
ILMN_2721178 1183.5 1
ILMN_3033922 1710.3 1
ILMN_3092673 4806.7 1
ILMN_2816356 36.7 0.98622
ILMN_2808939 866 1
ILMN_2634564 546.2 1
ILMN_2737647 41.4 0.99499
ILMN_2734484 42.8 0.99624
ILMN_2952292 58.1 1
ILMN_2699078 10.6 0.57519
ILMN_1213681 272.3 1
ILMN_2735413 12.3 0.63784
ILMN_2735415 24 0.92105
ILMN_2891688 228.8 1
ILMN_2637698 648.4 1
ILMN_2674228 302.7 1
ILMN_2601546 16.7 0.79449
ILMN_1230831 38 0.98872
ILMN_2848071 49 1

Total number of rows: 25697

Table truncated, full table size 588 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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