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Sample GSM991356 Query DataSets for GSM991356
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 004
Sample type RNA
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 62.5
strain sjl(%): 37.5
strain dba2(%): 0
log10(guhcl fractionation a-beta1-40): 4.53528063
transgenic(tg): APP Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 004
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3709.2 1
ILMN_2721178 1335.9 1
ILMN_3033922 1403.7 1
ILMN_3092673 4477.6 1
ILMN_2816356 26.6 0.97243
ILMN_2808939 1032.4 1
ILMN_2634564 507 1
ILMN_2737647 27.3 0.97619
ILMN_2734484 39.3 0.99749
ILMN_2952292 51.8 0.99875
ILMN_2699078 4.2 0.401
ILMN_1213681 272.9 1
ILMN_2735413 15.1 0.8609
ILMN_2735415 18.4 0.91855
ILMN_2891688 224.6 1
ILMN_2637698 720.4 1
ILMN_2674228 344.2 1
ILMN_2601546 11.5 0.74937
ILMN_1230831 17 0.90226
ILMN_2848071 24.4 0.96366

Total number of rows: 25697

Table truncated, full table size 589 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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