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Sample GSM991361 Query DataSets for GSM991361
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 009
Sample type RNA
 
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 16
strain sjl(%): 84
strain dba2(%): 0
log10(guhcl fractionation a-beta1-40): 4.81937659
transgenic(tg): APP Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 009
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
 
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
 
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
ID_REF
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2841.5 1
ILMN_2721178 1095.2 1
ILMN_3033922 1405.7 1
ILMN_3092673 4160.4 1
ILMN_2816356 30.3 0.97368
ILMN_2808939 893.6 1
ILMN_2634564 463.3 1
ILMN_2737647 25.4 0.95614
ILMN_2734484 31.5 0.97494
ILMN_2952292 53.1 0.99875
ILMN_2699078 -5.2 0.02632
ILMN_1213681 272.1 1
ILMN_2735413 18.9 0.90852
ILMN_2735415 7.8 0.6203
ILMN_2891688 210.3 1
ILMN_2637698 574.9 1
ILMN_2674228 300.1 1
ILMN_2601546 9.6 0.69549
ILMN_1230831 37.6 0.98622
ILMN_2848071 48.4 0.99499

Total number of rows: 25697

Table truncated, full table size 589 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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