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Sample GSM991379 Query DataSets for GSM991379
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 027
Sample type RNA
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 16
strain sjl(%): 9
strain dba2(%): 75
log10(guhcl fractionation a-beta1-40): 4.33070685
transgenic(tg): APP Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 027
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3294.1 1
ILMN_2721178 1065.1 1
ILMN_3033922 1729.5 1
ILMN_3092673 4963.2 1
ILMN_2816356 36.2 0.99499
ILMN_2808939 948.1 1
ILMN_2634564 553.9 1
ILMN_2737647 24.7 0.9787
ILMN_2734484 159.9 1
ILMN_2952292 71.2 1
ILMN_2699078 -4.3 0.25815
ILMN_1213681 248.2 1
ILMN_2735413 8.3 0.82707
ILMN_2735415 0.1 0.49499
ILMN_2891688 349.1 1
ILMN_2637698 1022.9 1
ILMN_2674228 280.5 1
ILMN_2601546 4.5 0.70426
ILMN_1230831 41.6 0.99749
ILMN_2848071 60.1 1

Total number of rows: 25697

Table truncated, full table size 587 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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