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Sample GSM991389 Query DataSets for GSM991389
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 037
Sample type RNA
 
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 0
strain sjl(%): 0
strain dba2(%): 100
log10(guhcl fractionation a-beta1-40): .
transgenic(tg): non Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 037
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
 
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
 
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
ID_REF
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3074.1 1
ILMN_2721178 943.2 1
ILMN_3033922 1562.3 1
ILMN_3092673 4526.8 1
ILMN_2816356 36.1 0.99499
ILMN_2808939 892.9 1
ILMN_2634564 502.6 1
ILMN_2737647 7.7 0.71303
ILMN_2734484 182.8 1
ILMN_2952292 60.9 1
ILMN_2699078 2.1 0.42607
ILMN_1213681 212.6 1
ILMN_2735413 5.6 0.60777
ILMN_2735415 -5.9 0.06015
ILMN_2891688 287.5 1
ILMN_2637698 1074.1 1
ILMN_2674228 288.9 1
ILMN_2601546 18.8 0.93734
ILMN_1230831 27.8 0.9812
ILMN_2848071 33.7 0.99499

Total number of rows: 25697

Table truncated, full table size 586 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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