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Sample GSM991391 Query DataSets for GSM991391
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 039
Sample type RNA
 
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 0
strain sjl(%): 100
strain dba2(%): 0
log10(guhcl fractionation a-beta1-40): .
transgenic(tg): non Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 039
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
 
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
 
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
ID_REF
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2906.1 1
ILMN_2721178 1035 1
ILMN_3033922 1181.9 1
ILMN_3092673 3612.4 1
ILMN_2816356 25.9 0.97118
ILMN_2808939 888.2 1
ILMN_2634564 540.5 1
ILMN_2737647 -0.2 0.73684
ILMN_2734484 119.7 1
ILMN_2952292 48.2 0.99499
ILMN_2699078 -14.7 0.17544
ILMN_1213681 252.5 1
ILMN_2735413 1.8 0.77569
ILMN_2735415 2.7 0.78195
ILMN_2891688 413.5 1
ILMN_2637698 916.8 1
ILMN_2674228 293.8 1
ILMN_2601546 10.1 0.88221
ILMN_1230831 32.3 0.98246
ILMN_2848071 44.2 0.99373

Total number of rows: 25697

Table truncated, full table size 600 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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