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Sample GSM991392 Query DataSets for GSM991392
Status Public on Jan 15, 2014
Title 12 months Mouse hipocampus 040
Sample type RNA
Source name 12 months Mouse hipocampus
Organism Mus musculus
Characteristics strain b6(%): 0
strain sjl(%): 100
strain dba2(%): 0
log10(guhcl fractionation a-beta1-40): .
transgenic(tg): non Tg
age: 12 months
tissue: hippocampus
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from mouse and human powdered hippocampi using RNeasy Lipid Tissue Mini kit (Qiagen). cDNA was prepared using High Capacity RNA-to-cDNA Master Mix (#4390775 Applied Biosystems) following the manufacturer’s standard protocol. Quality of RNA was assessed for each sample using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label biotin
Label protocol Biotinylated cRNA were prepared with the Illumina® TotalPrep™ RNA Amplification Kit
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 040
Data processing The data were normalised using rank invariant normalisation with IlluminaGUI in R
Submission date Aug 23, 2012
Last update date Jan 15, 2014
Contact name Noriyuki Hayashi
Organization name Osaka University Graduate School of Medicine
Department Complementary and Alternative Medicine
Street address G9, 2-2, Yamadaoka,
City Suita, Osaka
ZIP/Postal code 565-0871
Country Japan
Platform ID GPL6885
Series (1)
GSE40330 Abeta levels in APP Tg mice with mixed genetic backgrounds

Data table header descriptions
VALUE rank invariant normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2725 1
ILMN_2721178 896.9 1
ILMN_3033922 1273.3 1
ILMN_3092673 3310.7 1
ILMN_2816356 21.3 0.93233
ILMN_2808939 795.7 1
ILMN_2634564 573.6 1
ILMN_2737647 11.8 0.82957
ILMN_2734484 106.1 1
ILMN_2952292 45.9 0.99123
ILMN_2699078 -9.3 0.18296
ILMN_1213681 207.2 1
ILMN_2735413 11.3 0.82331
ILMN_2735415 6.4 0.75188
ILMN_2891688 399.8 1
ILMN_2637698 937.5 1
ILMN_2674228 273.7 1
ILMN_2601546 20.3 0.92732
ILMN_1230831 47.6 0.99248
ILMN_2848071 49.9 0.99248

Total number of rows: 25697

Table truncated, full table size 596 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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