|
Status |
Public on Jun 01, 2013 |
Title |
WTPA2 |
Sample type |
RNA |
|
|
Source name |
keratinocyte harvest from p1 pups
|
Organism |
Mus musculus |
Characteristics |
strain: FVBN genotype/variation: WT cell type: keratinocyte
|
Treatment protocol |
TPA treatment (0.2 μM) for 12 h
|
Growth protocol |
Keratinocyte media, 37°C, 5% CO2
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 2
|
Data processing |
The data were normalised using vsn normalisation with limma package in R
|
|
|
Submission date |
Aug 27, 2012 |
Last update date |
Jun 01, 2013 |
Contact name |
Annan Yang |
Organization name |
Johns Hopkins University
|
Department |
Physiology
|
Street address |
725 N. Wolfe St, Biophysics 203
|
City |
Baltimore |
State/province |
MD |
ZIP/Postal code |
21205 |
Country |
USA |
|
|
Platform ID |
GPL6885 |
Series (1) |
GSE40382 |
Different response of WT and Ts keratinocyte to TPA treatment |
|