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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract60_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326689 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1414.2885
P
0.001102
AFFX-BioB-M_at
2404.5193
P
0.000195
AFFX-BioB-3_at
1473.596
P
0.003212
AFFX-BioC-5_at
4171.5625
P
0.000169
AFFX-BioC-3_at
3214.6907
P
0.000044
AFFX-BioDn-5_at
3832.5002
P
0.000070
AFFX-BioDn-3_at
23018.975
P
0.000169
AFFX-CreX-5_at
34559.273
P
0.000044
AFFX-CreX-3_at
49727.14
P
0.000044
AFFX-DapX-5_at
21.283604
A
0.645547
AFFX-DapX-M_at
13.912644
A
0.712257
AFFX-DapX-3_at
38.801815
A
0.932322
AFFX-LysX-5_at
94.182106
A
0.368438
AFFX-LysX-M_at
42.42614
A
0.672921
AFFX-LysX-3_at
90.81353
A
0.440646
AFFX-PheX-5_at
27.044773
A
0.937071
AFFX-PheX-M_at
18.413267
A
0.910522
AFFX-PheX-3_at
98.105354
A
0.724854
AFFX-ThrX-5_at
43.521767
A
0.514890
AFFX-ThrX-M_at
32.28141
A
0.672921
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99436.CEL.gz
3.5 Mb
(ftp) (http) CEL
