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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract63_le2
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3399.809
P
0.002556
AFFX-BioB-M_at
6784.1445
P
0.000169
AFFX-BioB-3_at
3956.2722
P
0.001593
AFFX-BioC-5_at
12039.698
P
0.000081
AFFX-BioC-3_at
8522.074
P
0.000127
AFFX-BioDn-5_at
8676.576
P
0.000127
AFFX-BioDn-3_at
63088.004
P
0.000110
AFFX-CreX-5_at
114556.02
P
0.000044
AFFX-CreX-3_at
190654.48
P
0.000044
AFFX-DapX-5_at
402.32272
A
0.139482
AFFX-DapX-M_at
303.68417
A
0.440646
AFFX-DapX-3_at
74.93469
A
0.988616
AFFX-LysX-5_at
83.09656
A
0.876428
AFFX-LysX-M_at
149.67323
A
0.699394
AFFX-LysX-3_at
29.63095
A
0.814869
AFFX-PheX-5_at
23.96153
A
0.937071
AFFX-PheX-M_at
66.790115
A
0.891021
AFFX-PheX-3_at
737.83435
A
0.340661
AFFX-ThrX-5_at
85.89383
A
0.772364
AFFX-ThrX-M_at
46.392033
A
0.824672
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99443.CEL.gz
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