GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM99453

Query DataSets for GSM99453

Status

Public on Mar 08, 2006

Title

brain, Right Frontal Temporal: Extract68_le2

Sample type

RNA

Source name

brain, Right Frontal Temporal

Organism

Homo sapiens

Characteristics

tissue: brain, Right Frontal Temporal
histology: GBM
tumor number (as appears in figure 3): 706
age: 54
gender: MALE
grade: 4
living: DECEASED
survival time: 506
survival cluster: SC1
hc_74_samples: HC1B
hc_85_samples: HC1B
array: 133B

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL97

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	3741.6587	P	0.042962
AFFX-BioB-M_at	6648.353	P	0.003212
AFFX-BioB-3_at	1991.7825	A	0.116113
AFFX-BioC-5_at	10245.6455	P	0.000390
AFFX-BioC-3_at	7144.2827	P	0.000754
AFFX-BioDn-5_at	8276.479	P	0.001102
AFFX-BioDn-3_at	78505.1	P	0.000340
AFFX-CreX-5_at	61933.684	P	0.000044
AFFX-CreX-3_at	126226.695	P	0.000044
AFFX-DapX-5_at	644.08746	A	0.227636
AFFX-DapX-M_at	788.7982	A	0.131361
AFFX-DapX-3_at	181.06148	A	0.953518
AFFX-LysX-5_at	541.795	A	0.514890
AFFX-LysX-M_at	242.11487	A	0.699394
AFFX-LysX-3_at	40.345078	A	0.699394
AFFX-PheX-5_at	152.14255	A	0.834139
AFFX-PheX-M_at	155.28302	A	0.824672
AFFX-PheX-3_at	333.30893	A	0.772364
AFFX-ThrX-5_at	334.66183	A	0.672921
AFFX-ThrX-M_at	749.5017	A	0.500000

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99453.CEL.gz	3.3 Mb	(ftp)(http)	CEL