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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Temporal: Extract70_le2
Sample type
RNA
Source name
brain, Right Frontal Temporal
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Temporal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
5260.7056
P
0.001593
AFFX-BioB-M_at
9261.472
P
0.000509
AFFX-BioB-3_at
4046.3638
P
0.015183
AFFX-BioC-5_at
13432.918
P
0.000169
AFFX-BioC-3_at
9219.014
P
0.000127
AFFX-BioDn-5_at
8105.1514
P
0.000258
AFFX-BioDn-3_at
79612.2
P
0.000169
AFFX-CreX-5_at
95909.91
P
0.000044
AFFX-CreX-3_at
155530.1
P
0.000044
AFFX-DapX-5_at
58.30437
A
0.749204
AFFX-DapX-M_at
543.7361
A
0.425962
AFFX-DapX-3_at
48.666454
A
0.979978
AFFX-LysX-5_at
86.34322
A
0.804734
AFFX-LysX-M_at
201.87183
A
0.617401
AFFX-LysX-3_at
100.04778
A
0.603080
AFFX-PheX-5_at
35.68916
A
0.783476
AFFX-PheX-M_at
72.555466
A
0.772364
AFFX-PheX-3_at
754.2355
A
0.368438
AFFX-ThrX-5_at
166.17703
A
0.645547
AFFX-ThrX-M_at
623.29095
A
0.425962
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99457.CEL.gz
3.3 Mb
(ftp) (http) CEL
