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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Lobe: Extract72_le1
Sample type
RNA
Source name
brain, Right Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1020.81244
A
0.239063
AFFX-BioB-M_at
2075.5518
A
0.083592
AFFX-BioB-3_at
1412.0743
A
0.195266
AFFX-BioC-5_at
5936.5244
P
0.004017
AFFX-BioC-3_at
2708.8796
P
0.001593
AFFX-BioDn-5_at
3143.26
M
0.054213
AFFX-BioDn-3_at
20430.72
P
0.000390
AFFX-CreX-5_at
29995.71
P
0.000044
AFFX-CreX-3_at
45271.45
P
0.000044
AFFX-DapX-5_at
144.00804
A
0.699394
AFFX-DapX-M_at
210.20937
A
0.760937
AFFX-DapX-3_at
156.54071
A
0.978098
AFFX-LysX-5_at
130.35197
A
0.978098
AFFX-LysX-M_at
450.78156
A
0.574038
AFFX-LysX-3_at
92.8989
A
0.794268
AFFX-PheX-5_at
109.11007
A
0.953518
AFFX-PheX-M_at
107.66497
A
0.984817
AFFX-PheX-3_at
322.45746
A
0.712257
AFFX-ThrX-5_at
188.72523
A
0.976071
AFFX-ThrX-M_at
187.83858
A
0.794268
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