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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Lobe: Extract72_le2
Sample type
RNA
Source name
brain, Right Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3023.3157
P
0.004998
AFFX-BioB-M_at
4911.447
P
0.001593
AFFX-BioB-3_at
2151.2537
P
0.036569
AFFX-BioC-5_at
8051.0796
P
0.000127
AFFX-BioC-3_at
5927.8564
P
0.000052
AFFX-BioDn-5_at
7227.3525
P
0.000297
AFFX-BioDn-3_at
41380.453
P
0.000225
AFFX-CreX-5_at
80997.14
P
0.000044
AFFX-CreX-3_at
120489.92
P
0.000044
AFFX-DapX-5_at
274.08902
A
0.440646
AFFX-DapX-M_at
376.44318
A
0.470241
AFFX-DapX-3_at
79.35024
A
0.957038
AFFX-LysX-5_at
398.53806
A
0.440646
AFFX-LysX-M_at
670.90405
A
0.470241
AFFX-LysX-3_at
251.90453
A
0.354453
AFFX-PheX-5_at
38.341583
A
0.969024
AFFX-PheX-M_at
73.06453
A
0.921998
AFFX-PheX-3_at
213.71791
A
0.760937
AFFX-ThrX-5_at
77.84543
A
0.941556
AFFX-ThrX-M_at
388.97736
A
0.396920
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99461.CEL.gz
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