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Sample GSM99462

Query DataSets for GSM99462

Status

Public on Mar 08, 2006

Title

brain, Right Parietal Lobe: Extract73_le1

Sample type

RNA

Source name

brain, Right Parietal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Right Parietal Lobe
histology: GBM
tumor number (as appears in figure 3): 749
age: 39
gender: MALE
grade: 4
living: DECEASED
survival time: 53
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326704

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1285.3887	P	0.016670
AFFX-BioB-M_at	2691.7957	P	0.001410
AFFX-BioB-3_at	1256.7987	P	0.005565
AFFX-BioC-5_at	3810.1802	P	0.000169
AFFX-BioC-3_at	2974.7322	P	0.000095
AFFX-BioDn-5_at	2778.0483	P	0.000258
AFFX-BioDn-3_at	26420.979	P	0.000297
AFFX-CreX-5_at	32386.395	P	0.000044
AFFX-CreX-3_at	53373.14	P	0.000044
AFFX-DapX-5_at	150.16661	A	0.287743
AFFX-DapX-M_at	181.45985	A	0.072700
AFFX-DapX-3_at	30.073133	A	0.973889
AFFX-LysX-5_at	21.031431	A	0.659339
AFFX-LysX-M_at	120.220024	A	0.724854
AFFX-LysX-3_at	158.54485	A	0.239063
AFFX-PheX-5_at	13.673327	A	0.957038
AFFX-PheX-M_at	10.54848	A	0.981719
AFFX-PheX-3_at	121.244606	A	0.631562
AFFX-ThrX-5_at	46.9125	A	0.686277
AFFX-ThrX-M_at	208.55817	A	0.411380

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99462.CEL.gz	3.5 Mb	(ftp)(http)	CEL