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Status
Public on Mar 08, 2006
Title
brain, Right Parietal Lobe: Extract74_le2
Sample type
RNA
Source name
brain, Right Parietal Lobe
Organism
Homo sapiens
Characteristics
tissue: brain, Right Parietal Lobe histology: GBM tumor number (as appears in figure 3): 1028 age: 20 gender: FEMALE grade: 4 living: DECEASED survival time: 54 survival cluster: SC2 hc_85_samples: HC2A array: 133B
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM Treatment, type=remove
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97
Series (1)
Relations
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS 5 or GCOS software.
ABS_CALL
The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE
The detection p-value calculated by the MAS 5 or GCOS software
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
3390.2869
P
0.000754
AFFX-BioB-M_at
8112.0723
P
0.000297
AFFX-BioB-3_at
3221.712
P
0.001248
AFFX-BioC-5_at
11578.015
P
0.000070
AFFX-BioC-3_at
8826.864
P
0.000052
AFFX-BioDn-5_at
11504.69
P
0.000070
AFFX-BioDn-3_at
49488.82
P
0.000060
AFFX-CreX-5_at
114489.67
P
0.000044
AFFX-CreX-3_at
162471.33
P
0.000044
AFFX-DapX-5_at
271.55157
A
0.195266
AFFX-DapX-M_at
304.90085
A
0.514890
AFFX-DapX-3_at
53.71216
A
0.949771
AFFX-LysX-5_at
26.08221
A
0.737173
AFFX-LysX-M_at
112.235756
A
0.603080
AFFX-LysX-3_at
335.39377
A
0.239063
AFFX-PheX-5_at
58.392166
A
0.824672
AFFX-PheX-M_at
82.7668
A
0.852061
AFFX-PheX-3_at
226.89264
A
0.574038
AFFX-ThrX-5_at
33.37165
A
0.995002
AFFX-ThrX-M_at
37.767017
A
0.891021
Total number of rows: 22645 Table truncated, full table size 685 Kbytes .Supplementary file
Size
Download
File type/resource
GSM99465.CEL.gz
3.3 Mb
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CEL