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Sample GSM99465 Query DataSets for GSM99465
Status Public on Mar 08, 2006
Title brain, Right Parietal Lobe: Extract74_le2
Sample type RNA
 
Source name brain, Right Parietal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Right Parietal Lobe
histology: GBM
tumor number (as appears in figure 3): 1028
age: 20
gender: FEMALE
grade: 4
living: DECEASED
survival time: 54
survival cluster: SC2
hc_85_samples: HC2A
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3390.2869 P 0.000754
AFFX-BioB-M_at 8112.0723 P 0.000297
AFFX-BioB-3_at 3221.712 P 0.001248
AFFX-BioC-5_at 11578.015 P 0.000070
AFFX-BioC-3_at 8826.864 P 0.000052
AFFX-BioDn-5_at 11504.69 P 0.000070
AFFX-BioDn-3_at 49488.82 P 0.000060
AFFX-CreX-5_at 114489.67 P 0.000044
AFFX-CreX-3_at 162471.33 P 0.000044
AFFX-DapX-5_at 271.55157 A 0.195266
AFFX-DapX-M_at 304.90085 A 0.514890
AFFX-DapX-3_at 53.71216 A 0.949771
AFFX-LysX-5_at 26.08221 A 0.737173
AFFX-LysX-M_at 112.235756 A 0.603080
AFFX-LysX-3_at 335.39377 A 0.239063
AFFX-PheX-5_at 58.392166 A 0.824672
AFFX-PheX-M_at 82.7668 A 0.852061
AFFX-PheX-3_at 226.89264 A 0.574038
AFFX-ThrX-5_at 33.37165 A 0.995002
AFFX-ThrX-M_at 37.767017 A 0.891021

Total number of rows: 22645

Table truncated, full table size 685 Kbytes.




Supplementary file Size Download File type/resource
GSM99465.CEL.gz 3.3 Mb (ftp)(http) CEL

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